Index

_

__init__() (SciFiReaders.readers.generic.ImageReader method) _input_file_path (SciFiReaders.readers.generic.image.ImageReader.self attribute) (SciFiReaders.readers.generic.ImageReader.self attribute), [1] (SciFiReaders.readers.microscopy.em.tem.dm_reader.DM3Reader.self attribute) (SciFiReaders.readers.microscopy.em.tem.dm_reader.DMReader.self attribute) (SciFiReaders.readers.microscopy.spm.afm.AR_hdf5.ARhdf5Reader.self attribute) (SciFiReaders.readers.microscopy.spm.afm.bruker_nano.BrukerAFMReader.self attribute) (SciFiReaders.readers.microscopy.spm.afm.igor_ibw.IgorIBWReader.self attribute) (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator.self attribute) (SciFiReaders.readers.microscopy.spm.stm.nanonis_3ds.Nanonis3dsReader.self attribute) (SciFiReaders.readers.microscopy.spm.stm.nanonis_dat.NanonisDatReader.self attribute) (SciFiReaders.readers.microscopy.spm.stm.nanonis_sxm.NanonisSXMReader.self attribute) (SciFiReaders.readers.microscopy.spm.stm.omicron_asc.AscReader.self attribute) (SciFiReaders.readers.spectroscopy.SpeReader.RamanSpeReader.self attribute)

A

ARhdf5Reader (class in SciFiReaders.readers.microscopy.spm.afm.AR_hdf5)

AscReader (class in SciFiReaders.readers.microscopy.spm.stm.omicron_asc)

B

BrukerAFMReader (class in SciFiReaders.readers.microscopy.spm.afm.bruker_nano)

C

can_read() (SciFiReaders.readers.generic.image.ImageReader method) (SciFiReaders.readers.microscopy.em.tem.dm_reader.DM3Reader method) (SciFiReaders.readers.microscopy.em.tem.dm_reader.DMReader method) (SciFiReaders.readers.microscopy.em.tem.emd_reader.EMDReader method) (SciFiReaders.readers.microscopy.em.tem.nion_reader.NionReader method) (SciFiReaders.readers.microscopy.spm.afm.AR_hdf5.ARhdf5Reader method) (SciFiReaders.readers.microscopy.spm.afm.bruker_nano.BrukerAFMReader method) (SciFiReaders.readers.microscopy.spm.afm.igor_ibw.IgorIBWReader method) (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method) (SciFiReaders.readers.microscopy.spm.stm.nanonis_3ds.Nanonis3dsReader method) (SciFiReaders.readers.microscopy.spm.stm.nanonis_dat.NanonisDatReader method) (SciFiReaders.readers.microscopy.spm.stm.nanonis_sxm.NanonisSXMReader method) (SciFiReaders.readers.microscopy.spm.stm.omicron_asc.AscReader method) (SciFiReaders.readers.SID.Nsid_reader.NSIDReader method) (SciFiReaders.readers.spectroscopy.SpeReader.RamanSpeReader method)

convert_hyperspy() (in module SciFiReaders.readers.converters.hyperspy) create_h5() (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method) create_hdf5_file() (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method)

D

data_cube (SciFiReaders.readers.microscopy.em.tem.dm_reader.DM3Reader property) (SciFiReaders.readers.microscopy.em.tem.dm_reader.DMReader property)

DM3Reader (class in SciFiReaders.readers.microscopy.em.tem.dm_reader) DMReader (class in SciFiReaders.readers.microscopy.em.tem.dm_reader)

E

EMDReader (class in SciFiReaders.readers.microscopy.em.tem.emd_reader)

G

get_def_unit() (SciFiReaders.readers.microscopy.spm.afm.AR_hdf5.ARhdf5Reader method) get_path() (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method)

get_raw() (SciFiReaders.readers.microscopy.em.tem.dm_reader.DM3Reader method) (SciFiReaders.readers.microscopy.em.tem.dm_reader.DMReader method)

I

IgorIBWReader (class in SciFiReaders.readers.microscopy.spm.afm.igor_ibw) ImageReader (class in SciFiReaders.readers.generic) (class in SciFiReaders.readers.generic.image)

ingest() (in module SciFiReaders.ingestor)

M

module SciFiReaders SciFiReaders.ingestor SciFiReaders.readers SciFiReaders.readers.converters SciFiReaders.readers.converters.hyperspy SciFiReaders.readers.generic SciFiReaders.readers.generic.image SciFiReaders.readers.microscopy SciFiReaders.readers.microscopy.em SciFiReaders.readers.microscopy.em.tem SciFiReaders.readers.microscopy.em.tem.dm_reader, [1] SciFiReaders.readers.microscopy.em.tem.emd_reader SciFiReaders.readers.microscopy.em.tem.nion_reader, [1] SciFiReaders.readers.microscopy.em.tem.stem SciFiReaders.readers.microscopy.ion SciFiReaders.readers.microscopy.spm SciFiReaders.readers.microscopy.spm.afm SciFiReaders.readers.microscopy.spm.afm.AR_hdf5 SciFiReaders.readers.microscopy.spm.afm.base_utils SciFiReaders.readers.microscopy.spm.afm.bruker_nano SciFiReaders.readers.microscopy.spm.afm.igor_ibw SciFiReaders.readers.microscopy.spm.afm.pifm SciFiReaders.readers.microscopy.spm.stm SciFiReaders.readers.microscopy.spm.stm.nanonis_3ds SciFiReaders.readers.microscopy.spm.stm.nanonis_dat SciFiReaders.readers.microscopy.spm.stm.nanonis_sxm SciFiReaders.readers.microscopy.spm.stm.omicron_asc SciFiReaders.readers.SID SciFiReaders.readers.SID.Nsid_reader SciFiReaders.readers.SID.Usid_reader SciFiReaders.readers.spectroscopy SciFiReaders.readers.spectroscopy.SpeReader

N

Nanonis3dsReader (class in SciFiReaders.readers.microscopy.spm.stm.nanonis_3ds) NanonisDatReader (class in SciFiReaders.readers.microscopy.spm.stm.nanonis_dat) NanonisSXMReader (class in SciFiReaders.readers.microscopy.spm.stm.nanonis_sxm)

NionReader (class in SciFiReaders.readers.microscopy.em.tem.nion_reader) note_value() (SciFiReaders.readers.microscopy.spm.afm.AR_hdf5.ARhdf5Reader method) NSIDReader (class in SciFiReaders.readers.SID.Nsid_reader)

P

parse_zip() (in module SciFiReaders.readers.microscopy.em.tem.nion_reader)

PiFMTranslator (class in SciFiReaders.readers.microscopy.spm.afm.pifm)

R

RamanSpeReader (class in SciFiReaders.readers.spectroscopy.SpeReader) read() (SciFiReaders.readers.generic.image.ImageReader method) (SciFiReaders.readers.microscopy.em.tem.dm_reader.DM3Reader method) (SciFiReaders.readers.microscopy.em.tem.dm_reader.DMReader method) (SciFiReaders.readers.microscopy.em.tem.emd_reader.EMDReader method) (SciFiReaders.readers.microscopy.em.tem.nion_reader.NionReader method) (SciFiReaders.readers.microscopy.spm.afm.AR_hdf5.ARhdf5Reader method) (SciFiReaders.readers.microscopy.spm.afm.bruker_nano.BrukerAFMReader method) (SciFiReaders.readers.microscopy.spm.afm.igor_ibw.IgorIBWReader method) (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method) (SciFiReaders.readers.microscopy.spm.stm.nanonis_3ds.Nanonis3dsReader method) (SciFiReaders.readers.microscopy.spm.stm.nanonis_dat.NanonisDatReader method) (SciFiReaders.readers.microscopy.spm.stm.nanonis_sxm.NanonisSXMReader method) (SciFiReaders.readers.microscopy.spm.stm.omicron_asc.AscReader method) (SciFiReaders.readers.SID.Nsid_reader.NSIDReader method) (SciFiReaders.readers.spectroscopy.SpeReader.RamanSpeReader method)

read_all() (SciFiReaders.readers.SID.Nsid_reader.NSIDReader method) read_anfatec_params() (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method) read_binary_data() (in module SciFiReaders.readers.microscopy.spm.afm.base_utils) read_file_desc() (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method) read_header_dm() (in module SciFiReaders.readers.microscopy.em.tem.dm_reader) read_image() (in module SciFiReaders.readers.generic.image) read_imgs() (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method) read_spectra() (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method) read_spectrograms() (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method) read_string() (in module SciFiReaders.readers.microscopy.em.tem.dm_reader)

S

SciFiReaders module SciFiReaders.ingestor module SciFiReaders.readers module SciFiReaders.readers.converters module SciFiReaders.readers.converters.hyperspy module SciFiReaders.readers.generic module SciFiReaders.readers.generic.image module SciFiReaders.readers.microscopy module SciFiReaders.readers.microscopy.em module SciFiReaders.readers.microscopy.em.tem module SciFiReaders.readers.microscopy.em.tem.dm_reader module, [1] SciFiReaders.readers.microscopy.em.tem.emd_reader module SciFiReaders.readers.microscopy.em.tem.nion_reader module, [1] SciFiReaders.readers.microscopy.em.tem.stem module SciFiReaders.readers.microscopy.ion module SciFiReaders.readers.microscopy.spm module

SciFiReaders.readers.microscopy.spm.afm module SciFiReaders.readers.microscopy.spm.afm.AR_hdf5 module SciFiReaders.readers.microscopy.spm.afm.base_utils module SciFiReaders.readers.microscopy.spm.afm.bruker_nano module SciFiReaders.readers.microscopy.spm.afm.igor_ibw module SciFiReaders.readers.microscopy.spm.afm.pifm module SciFiReaders.readers.microscopy.spm.stm module SciFiReaders.readers.microscopy.spm.stm.nanonis_3ds module SciFiReaders.readers.microscopy.spm.stm.nanonis_dat module SciFiReaders.readers.microscopy.spm.stm.nanonis_sxm module SciFiReaders.readers.microscopy.spm.stm.omicron_asc module SciFiReaders.readers.SID module SciFiReaders.readers.SID.Nsid_reader module SciFiReaders.readers.SID.Usid_reader module SciFiReaders.readers.spectroscopy module SciFiReaders.readers.spectroscopy.SpeReader module

W

write_datasets_hdf5() (SciFiReaders.readers.microscopy.spm.afm.pifm.PiFMTranslator method)