SciFiReaders.readers.microscopy.em.tem.dm_reader.DM3Reader

Contents

SciFiReaders.readers.microscopy.em.tem.dm_reader.DM3Reader#

class SciFiReaders.readers.microscopy.em.tem.dm_reader.DM3Reader(file_path, verbose=False)[source]#

Bases: DMReader

DM3 file reader class.

Parameters:: file_path (str) – Path to the file that needs to be read

self._input_file_path#

Path to the file that will be read

Type:: str

Notes

This method will check to make sure that the provided file_path is indeed a string and a valid file path.
Consider calling can_read() within __init__() for validating the provided file

Raises:: FileNotFoundError –

Methods

`can_read`
`close`	Close the DM file.
`extract_crucial_metadata`	Extracts crucial metadata from the original_metadata dictionary.
`get_dataset`	Reads dictionary of imageList into sidpy.Dataset
`get_filename`	Gets the filename of the DM file.
`get_raw`	Extracts data as np array
`get_tags`	Gets the tags from the DM file.
`read`	Read the DM file and extract metadata.
`set_data_type`	Sets the data type of the dataset based on its shape and metadata.
`set_dimensions`	Sets the dimensions of the dataset.

Attributes

`filename`	Gets the filename of the DM file.
`tags`	Gets the tags from the DM file.

close()#: Close the DM file.

extract_crucial_metadata(dataset_key)#: Extracts crucial metadata from the original_metadata dictionary.

property filename#: Gets the filename of the DM file.

get_dataset(image_dict) → Dataset#: Reads dictionary of imageList into sidpy.Dataset

get_filename()#: Gets the filename of the DM file.

get_raw(image_dict)#: Extracts data as np array

get_tags()#: Gets the tags from the DM file.

read()#: Read the DM file and extract metadata.

set_data_type(dataset)#: Sets the data type of the dataset based on its shape and metadata.

set_dimensions(dataset)#: Sets the dimensions of the dataset.

property tags#: Gets the tags from the DM file.