Index

_

__add__() (sidpy.sid.dimension.Dimension method) __mul__() (sidpy.sid.dimension.Dimension method) __new__() (sidpy.sid.dimension.Dimension static method)

_axes (sidpy.sid.dataset.Dataset.self attribute) _input_file_path (sidpy.sid.reader.Reader.self attribute) _structures (sidpy.sid.dataset.Dataset.self attribute)

A

add_provenance() (sidpy.sid.dataset.Dataset method) add_to_dict() (in module sidpy.io.interface_utils) ALIGNED (sidpy.sid.dimension.Dimension attribute) all() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) any() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) argmax() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method)

argmin() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) argpartition() (sidpy.sid.dimension.Dimension method) argsort() (sidpy.sid.dimension.Dimension method) argtopk() (sidpy.sid.dataset.Dataset method) assign_group_index() (in module sidpy.hdf.prov_utils) astype() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) attempt_reg_ref_build() (in module sidpy.hdf.reg_ref)

B

base (sidpy.sid.dimension.Dimension attribute) BEHAVED (sidpy.sid.dimension.Dimension attribute)

blocks (sidpy.sid.dataset.Dataset property) build_ind_val_matrices() (in module sidpy.base.num_utils) byteswap() (sidpy.sid.dimension.Dimension method)

C

C_CONTIGUOUS (sidpy.sid.dimension.Dimension attribute) CARRAY (sidpy.sid.dimension.Dimension attribute) cbar_for_line_plot() (in module sidpy.viz.plot_utils.curve) check_dtype() (in module sidpy.hdf.dtype_utils) check_for_matching_attrs() (in module sidpy.hdf.prov_utils) check_for_old() (in module sidpy.hdf.prov_utils) check_ssh() (in module sidpy.io.interface_utils) choose() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) chunks (sidpy.sid.dataset.Dataset property) clean_reg_ref() (in module sidpy.hdf.reg_ref) clean_string_att() (in module sidpy.base.string_utils) clip() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) cmap_from_rgba() (in module sidpy.viz.plot_utils.cmap) cmap_hot_desaturated() (in module sidpy.viz.plot_utils.cmap) cmap_jet_white_center() (in module sidpy.viz.plot_utils.cmap) ComplexSpectralImageFitVisualizer (class in sidpy.viz.dataset_viz) ComplexSpectralImageVisualizer (class in sidpy.viz.dataset_viz) compress() (sidpy.sid.dimension.Dimension method) compute() (sidpy.sid.dataset.Dataset method)

compute_chunk_sizes() (sidpy.sid.dataset.Dataset method) conj() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) conjugate() (sidpy.sid.dimension.Dimension method) contains_integers() (in module sidpy.base.num_utils) convert_hyperspy() (in module sidpy.sid.dataset) copy() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) copy_all_region_refs() (in module sidpy.hdf.reg_ref) copy_attributes() (in module sidpy.hdf.hdf_utils) copy_dataset() (in module sidpy.hdf.hdf_utils) copy_linked_objects() (in module sidpy.hdf.hdf_utils) copy_reg_ref_reduced_dim() (in module sidpy.hdf.reg_ref) create_indexed_group() (in module sidpy.hdf.prov_utils) create_region_reference() (in module sidpy.hdf.reg_ref) create_results_group() (in module sidpy.hdf.prov_utils) ctypes (sidpy.sid.dimension.Dimension attribute) cumprod() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) cumsum() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) CurveVisualizer (class in sidpy.viz.dataset_viz)

D

data (sidpy.sid.dimension.Dimension attribute) data_descriptor (sidpy.sid.dataset.Dataset.self attribute) data_type (sidpy.sid.dataset.Dataset.self attribute) Dataset (class in sidpy.sid.dataset) DataType (class in sidpy.sid.dataset) del_dimension() (sidpy.sid.dataset.Dataset method) diagonal() (sidpy.sid.dimension.Dimension method) Dimension (class in sidpy.sid.dimension) dimension_type (sidpy.sid.dimension.Dimension.self attribute), [1]

DimensionType (class in sidpy.sid.dimension) dir_name (sidpy.io.interface_utils.open_file_dialog attribute) discrete_cmap() (in module sidpy.viz.plot_utils.cmap) do_fit() (sidpy.proc.fitter.SidFitter method) do_guess() (sidpy.proc.fitter.SidFitter method) dot() (sidpy.sid.dataset.Dataset method) dtype (sidpy.sid.dimension.Dimension attribute) dump() (sidpy.sid.dimension.Dimension method) dumps() (sidpy.sid.dimension.Dimension method)

E

export_fig_data() (in module sidpy.viz.plot_utils.misc)

extension (sidpy.io.interface_utils.open_file_dialog attribute)

F

F_CONTIGUOUS (sidpy.sid.dimension.Dimension attribute) FARRAY (sidpy.sid.dimension.Dimension attribute) fft() (sidpy.sid.dataset.Dataset method) fill() (sidpy.sid.dimension.Dimension method) find_dataset() (in module sidpy.hdf.hdf_utils) find_results_groups() (in module sidpy.hdf.prov_utils) flags (sidpy.sid.dimension.Dimension attribute) flat (sidpy.sid.dimension.Dimension attribute) flatten() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) flatten_complex() (sidpy.sid.dataset.Dataset method) flatten_complex_to_real() (in module sidpy.hdf.dtype_utils)

flatten_compound_to_real() (in module sidpy.hdf.dtype_utils) flatten_dict() (in module sidpy.base.dict_utils) flatten_to_real() (in module sidpy.hdf.dtype_utils) FNC (sidpy.sid.dimension.Dimension attribute) fold() (sidpy.sid.dataset.Dataset method) FORC (sidpy.sid.dimension.Dimension attribute) format_quantity() (in module sidpy.base.string_utils) format_size() (in module sidpy.base.string_utils) format_time() (in module sidpy.base.string_utils) formatted_str_to_number() (in module sidpy.base.string_utils) FourDimImageVisualizer (class in sidpy.viz.dataset_viz) from_array() (sidpy.sid.dataset.Dataset class method)

G

get_attr() (in module sidpy.hdf.hdf_utils) get_attributes() (in module sidpy.hdf.hdf_utils) get_auxiliary_datasets() (in module sidpy.hdf.hdf_utils) get_cmap_object() (in module sidpy.viz.plot_utils.cmap) get_compound_sub_dtypes() (in module sidpy.hdf.dtype_utils) get_dimensions_by_type() (sidpy.sid.dataset.Dataset method) get_directory() (sidpy.io.interface_utils.open_file_dialog method) get_exponent() (in module sidpy.base.num_utils) get_extent() (sidpy.sid.dataset.Dataset method) get_file_name() (sidpy.io.interface_utils.open_file_dialog method) get_fitted_dataset() (sidpy.proc.fitter.SidFitter method) get_h5_obj_refs() (in module sidpy.hdf.hdf_utils)

get_image_dims() (sidpy.sid.dataset.Dataset method) get_indices_for_region_ref() (in module sidpy.hdf.reg_ref) get_plot_grid_size() (in module sidpy.viz.plot_utils.misc) get_QT_app() (in module sidpy.io.interface_utils) get_region() (in module sidpy.hdf.reg_ref) get_slope() (in module sidpy.base.num_utils) get_source_dataset() (in module sidpy.hdf.prov_utils) get_spectral_dims() (sidpy.sid.dataset.Dataset method) get_spectrum() (sidpy.viz.dataset_viz.PointCloudVisualizer method) (sidpy.viz.dataset_viz.PointCloudVisualizerBase method) get_time_stamp() (in module sidpy.base.string_utils) getfield() (sidpy.sid.dimension.Dimension method)

H

h5_dataset (sidpy.sid.dataset.Dataset.self attribute)

h5_group_to_dict() (in module sidpy.hdf.hdf_utils)

I

imag (sidpy.sid.dimension.Dimension attribute) ImageStackVisualizer (class in sidpy.viz.dataset_viz) ImageVisualizer (class in sidpy.viz.dataset_viz) integers_to_slices() (in module sidpy.base.num_utils) is_complex_dtype() (in module sidpy.hdf.dtype_utils)

is_editable_h5() (in module sidpy.hdf.hdf_utils) is_simple_list() (in module sidpy.sid.dataset) is_valid_file() (sidpy.sid.translator.Translator static method) item() (sidpy.sid.dimension.Dimension method) itemsize (sidpy.sid.dataset.Dataset property) (sidpy.sid.dimension.Dimension attribute)

L

lazy_load_array() (in module sidpy.hdf.hdf_utils) like_data() (sidpy.sid.dataset.Dataset method)

link_h5_obj_as_alias() (in module sidpy.hdf.hdf_utils) link_h5_objects_as_attrs() (in module sidpy.hdf.hdf_utils)

M

make_linear_alpha_cmap() (in module sidpy.viz.plot_utils.cmap) make_scalar_mappable() (in module sidpy.viz.plot_utils.misc) map_blocks() (sidpy.sid.dataset.Dataset method) map_overlap() (sidpy.sid.dataset.Dataset method) max() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) mean() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) merge_dicts() (in module sidpy.base.dict_utils) meta_data (sidpy.sid.dataset.Dataset.self attribute) min() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) modality (sidpy.sid.dataset.Dataset.self attribute) module sidpy sidpy.base sidpy.base.dict_utils sidpy.base.num_utils sidpy.base.string_utils sidpy.hdf sidpy.hdf.dtype_utils sidpy.hdf.hdf_utils sidpy.hdf.prov_utils sidpy.hdf.reg_ref sidpy.io sidpy.io.interface_utils sidpy.proc sidpy.proc.fitter sidpy.sid sidpy.sid.dataset sidpy.sid.dimension sidpy.sid.reader sidpy.sid.translator sidpy.viz sidpy.viz.dataset_viz, [1] sidpy.viz.jupyter_utils, [1] sidpy.viz.plot_utils, [1] sidpy.viz.plot_utils.cmap sidpy.viz.plot_utils.curve sidpy.viz.plot_utils.image sidpy.viz.plot_utils.misc

moment() (sidpy.sid.dataset.Dataset method) mT (sidpy.sid.dimension.Dimension attribute) MultiImageStackVisualizer (class in sidpy.viz.dataset_viz)

N

name (sidpy.sid.dimension.Dimension.self attribute), [1] nbytes (sidpy.sid.dataset.Dataset property) (sidpy.sid.dimension.Dimension attribute) ndim (sidpy.sid.dimension.Dimension attribute)

nest_dict() (in module sidpy.base.dict_utils) nested_dict_from_flattened_key() (in module sidpy.base.dict_utils) nonzero() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method)

O

open_file_dialog (class in sidpy.io.interface_utils) openfile_dialog_QT() (in module sidpy.io.interface_utils)

openfile_dialog_qt() (in module sidpy.io.interface_utils) original_metadata (sidpy.sid.dataset.Dataset.self attribute) OWNDATA (sidpy.sid.dimension.Dimension attribute)

P

partition() (sidpy.sid.dimension.Dimension method) partitions (sidpy.sid.dataset.Dataset property) persist() (sidpy.sid.dataset.Dataset method) plot() (sidpy.sid.dataset.Dataset method) plot_complex_spectra() (in module sidpy.viz.plot_utils.curve) plot_curves() (in module sidpy.viz.plot_utils.curve) plot_line_family() (in module sidpy.viz.plot_utils.curve) plot_map() (in module sidpy.viz.plot_utils.image) plot_map_stack() (in module sidpy.viz.plot_utils.image)

plot_scree() (in module sidpy.viz.plot_utils.curve) PointCloudVisualizer (class in sidpy.viz.dataset_viz) PointCloudVisualizerBase (class in sidpy.viz.dataset_viz) print_nested_dict() (in module sidpy.base.dict_utils) print_tree() (in module sidpy.hdf.hdf_utils) prod() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) progress_bar() (in module sidpy.io.interface_utils) put() (sidpy.sid.dimension.Dimension method)

Q

quantity (sidpy.sid.dataset.Dataset.self attribute) (sidpy.sid.dimension.Dimension.self attribute), [1]

R

rainbow_plot() (in module sidpy.viz.plot_utils.curve) ravel() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) Reader (class in sidpy.sid.reader) real (sidpy.sid.dimension.Dimension attribute) rechunk() (sidpy.sid.dataset.Dataset method) remove_extra_delimiters() (in module sidpy.base.string_utils) rename_dimension() (sidpy.sid.dataset.Dataset method)

repeat() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) reset_plot_params() (in module sidpy.viz.plot_utils.misc) reshape() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) resize() (sidpy.sid.dimension.Dimension method) round() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method)

S

save_fig_filebox_button() (in module sidpy.viz.jupyter_utils) savefile_dialog() (in module sidpy.io.interface_utils) savefile_dialog_qt() (in module sidpy.io.interface_utils) searchsorted() (sidpy.sid.dimension.Dimension method) set_dimension() (sidpy.sid.dataset.Dataset method) set_options() (sidpy.io.interface_utils.open_file_dialog method) set_thumbnail() (sidpy.sid.dataset.Dataset method) set_tick_font_size() (in module sidpy.viz.plot_utils.misc) setfield() (sidpy.sid.dimension.Dimension method) setflags() (sidpy.sid.dimension.Dimension method) shape (sidpy.sid.dimension.Dimension attribute) shuffle() (sidpy.sid.dataset.Dataset method) SidFitter (class in sidpy.proc.fitter) sidpy module sidpy.base module sidpy.base.dict_utils module sidpy.base.num_utils module sidpy.base.string_utils module sidpy.hdf module sidpy.hdf.dtype_utils module sidpy.hdf.hdf_utils module sidpy.hdf.prov_utils module sidpy.hdf.reg_ref module sidpy.io module sidpy.io.interface_utils module sidpy.proc module sidpy.proc.fitter module sidpy.sid module sidpy.sid.dataset module

sidpy.sid.dimension module sidpy.sid.reader module sidpy.sid.translator module sidpy.viz module sidpy.viz.dataset_viz module, [1] sidpy.viz.jupyter_utils module, [1] sidpy.viz.plot_utils module, [1] sidpy.viz.plot_utils.cmap module sidpy.viz.plot_utils.curve module sidpy.viz.plot_utils.image module sidpy.viz.plot_utils.misc module simple_ndim_visualizer() (in module sidpy.viz.jupyter_utils) simple_region_ref_copy() (in module sidpy.hdf.reg_ref) size (sidpy.sid.dataset.Dataset property) (sidpy.sid.dimension.Dimension attribute) sort() (sidpy.sid.dimension.Dimension method) source (sidpy.sid.dataset.Dataset.self attribute) SpectralImageFitVisualizer (class in sidpy.viz.dataset_viz) SpectralImageVisualizer (class in sidpy.viz.dataset_viz) SpectralImageVisualizerBase (class in sidpy.viz.dataset_viz) squeeze() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) stack_real_to_complex() (in module sidpy.hdf.dtype_utils) stack_real_to_compound() (in module sidpy.hdf.dtype_utils) stack_real_to_target_dtype() (in module sidpy.hdf.dtype_utils) std() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) store() (sidpy.sid.dataset.Dataset method) str_to_other() (in module sidpy.base.string_utils) strides (sidpy.sid.dimension.Dimension attribute) sum() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) swapaxes() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method)

T

T (sidpy.sid.dimension.Dimension attribute) take() (sidpy.sid.dimension.Dimension method) title (sidpy.sid.dataset.Dataset.self attribute) to_backend() (sidpy.sid.dataset.Dataset method) to_dask_dataframe() (sidpy.sid.dataset.Dataset method) to_delayed() (sidpy.sid.dataset.Dataset method) to_hdf5() (sidpy.sid.dataset.Dataset method) to_ranges() (in module sidpy.base.num_utils) to_svg() (sidpy.sid.dataset.Dataset method) to_tiledb() (sidpy.sid.dataset.Dataset method) to_zarr() (sidpy.sid.dataset.Dataset method)

tobytes() (sidpy.sid.dimension.Dimension method) tofile() (sidpy.sid.dimension.Dimension method) tolist() (sidpy.sid.dimension.Dimension method) topk() (sidpy.sid.dataset.Dataset method) tostring() (sidpy.sid.dimension.Dimension method) trace() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) translate() (sidpy.sid.translator.Translator method) Translator (class in sidpy.sid.translator) transpose() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method)

U

units (sidpy.sid.dataset.Dataset.self attribute) (sidpy.sid.dimension.Dimension.self attribute), [1]

update_directory_list() (in module sidpy.io.interface_utils) use_nice_plot_params() (in module sidpy.viz.plot_utils.misc) use_scientific_ticks() (in module sidpy.viz.plot_utils.misc)

V

validate_dtype() (in module sidpy.hdf.dtype_utils) validate_h5_objs_in_same_h5_file() (in module sidpy.hdf.hdf_utils) validate_list_of_strings() (in module sidpy.base.string_utils) validate_single_string_arg() (in module sidpy.base.string_utils) validate_string_args() (in module sidpy.base.string_utils) values (sidpy.sid.dimension.Dimension.self attribute), [1] var() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method)

view (sidpy.sid.dataset.Dataset.self attribute) view() (sidpy.sid.dataset.Dataset method) (sidpy.sid.dimension.Dimension method) view_metadata() (sidpy.sid.dataset.Dataset method) view_original_metadata() (sidpy.sid.dataset.Dataset method) view_subclass() (in module sidpy.sid.dataset) vindex (sidpy.sid.dataset.Dataset property) visualize() (sidpy.sid.dataset.Dataset method) visualize_fit_results() (sidpy.proc.fitter.SidFitter method)

W

write_book_keeping_attrs() (in module sidpy.hdf.hdf_utils) write_dict_to_h5_group() (in module sidpy.hdf.hdf_utils) write_region_references() (in module sidpy.hdf.reg_ref)

write_simple_attrs() (in module sidpy.hdf.hdf_utils) WRITEABLE (sidpy.sid.dimension.Dimension attribute) WRITEBACKIFCOPY (sidpy.sid.dimension.Dimension attribute)