Index

_

__init__() (BGlib.be.analysis.BELoopFitter method), [1] (BGlib.be.analysis.BERelaxFit method), [1] (BGlib.be.analysis.BESHOfitter method), [1] (BGlib.be.analysis.Fitter method), [1] (BGlib.gmode.analysis.GIVBayesian method), [1]

__str__() (BGlib.be.analysis.utils.tree.ClusterTree method)

A

addBEHist() (BGlib.be.translators.df_utils.be_utils.BEHistogram method)

are_compatible_filters() (in module BGlib.gmode.proc.fft)

B

BandPassFilter (class in BGlib.gmode.proc.fft) bayesian_inference_on_period() (in module BGlib.gmode.analysis.utils.giv_utils) BEHistogram (class in BGlib.be.translators.df_utils.be_utils) BELoopFitter (class in BGlib.be.analysis), [1] (class in BGlib.be.analysis.be_loop_fitter) BEodfParser (class in BGlib.be.translators.be_odf) BEodfRelaxationTranslator (class in BGlib.be.translators.be_odf_relaxation) BEodfTranslator (class in BGlib.be.translators.be_odf) BEPSndfParser (class in BGlib.be.translators.beps_ndf) BEPSndfPixel (class in BGlib.be.translators.beps_ndf) BEPSndfTranslator (class in BGlib.be.translators.beps_ndf) BERelaxFit (class in BGlib.be.analysis), [1] (class in BGlib.be.analysis.be_relax_fit) BESHOfitter (class in BGlib.be.analysis), [1] (class in BGlib.be.analysis.be_sho_fitter) BGlib module BGlib.be module BGlib.be.analysis module, [1] BGlib.be.analysis.be_loop_fitter module BGlib.be.analysis.be_relax_fit module BGlib.be.analysis.be_sho_fitter module BGlib.be.analysis.fitter module BGlib.be.analysis.utils module, [1], [2] BGlib.be.analysis.utils.be_loop module BGlib.be.analysis.utils.be_sho module BGlib.be.analysis.utils.tree module BGlib.be.translators module, [1] BGlib.be.translators.be_odf module BGlib.be.translators.be_odf_relaxation module BGlib.be.translators.beps_data_generator module BGlib.be.translators.beps_ndf module BGlib.be.translators.df_utils module BGlib.be.translators.df_utils.be_utils module BGlib.be.translators.df_utils.beps_gen_utils module BGlib.be.translators.df_utils.histogram module BGlib.be.translators.forc_iv module BGlib.be.translators.labview_h5_patcher module

BGlib.be.viz module, [1] BGlib.be.viz.be_viz_utils module, [1], [2] BGlib.be.viz.qt_visualizers module BGlib.be.viz.qt_visualizers.io_funcs module BGlib.gmode module BGlib.gmode.analysis module, [1] BGlib.gmode.analysis.giv_bayesian module BGlib.gmode.analysis.utils module BGlib.gmode.analysis.utils.giv_utils module BGlib.gmode.proc module BGlib.gmode.proc.fft module BGlib.gmode.proc.gmode_utils module BGlib.gmode.proc.hist module BGlib.gmode.proc.signal_filter module BGlib.gmode.translators module, [1] BGlib.gmode.translators.df_utils module BGlib.gmode.translators.df_utils.gmode_utils module BGlib.gmode.translators.general_dynamic_mode module BGlib.gmode.translators.gmode_iv module BGlib.gmode.translators.gmode_line module BGlib.gmode.translators.gmode_tune module BGlib.gmode.viz module, [1] BGlib.misc module BGlib.misc.translators module, [1] BGlib.misc.translators.tr_kpfm module build_composite_freq_filter() (in module BGlib.gmode.proc.fft) build_histogram() (in module BGlib.be.translators.df_utils.histogram) (in module BGlib.gmode.proc.hist) build_loop_from_mat() (in module BGlib.be.translators.df_utils.beps_gen_utils) build_radius_matrix() (in module BGlib.gmode.proc.fft) buildBEHist() (BGlib.be.translators.df_utils.be_utils.BEHistogram method) buildPlotGroupHist() (BGlib.be.translators.df_utils.be_utils.BEHistogram method)

C

calc_loop_coef_mat() (BGlib.be.translators.beps_data_generator.FakeBEPSGenerator method) calc_switching_coef_vec() (in module BGlib.be.analysis.utils.be_loop) calculate_loop_centroid() (in module BGlib.be.analysis.utils.be_loop) centroids (BGlib.be.analysis.utils.tree.ClusterTree attribute) ClusterTree (class in BGlib.be.analysis.utils.tree) combine_in_out_field_loops() (in module BGlib.be.translators.df_utils.beps_gen_utils) complex_gaussian() (in module BGlib.be.analysis.be_sho_fitter)

compute() (BGlib.be.analysis.be_loop_fitter.BELoopFitter method) (BGlib.be.analysis.be_relax_fit.BERelaxFit method) (BGlib.be.analysis.be_sho_fitter.BESHOfitter method) (BGlib.be.analysis.fitter.Fitter method) (BGlib.gmode.analysis.giv_bayesian.GIVBayesian method) (BGlib.gmode.proc.signal_filter.SignalFilter method) createSpecVals() (in module BGlib.be.translators.df_utils.be_utils)

D

decompress_response() (in module BGlib.gmode.proc.gmode_utils) do_bayesian_inference() (in module BGlib.gmode.analysis.utils.giv_utils) do_fit() (BGlib.be.analysis.be_loop_fitter.BELoopFitter method) (BGlib.be.analysis.be_sho_fitter.BESHOfitter method) (BGlib.be.analysis.fitter.Fitter method)

do_guess() (BGlib.be.analysis.be_loop_fitter.BELoopFitter method) (BGlib.be.analysis.be_sho_fitter.BESHOfitter method) (BGlib.be.analysis.fitter.Fitter method) double_exp() (in module BGlib.be.analysis.be_relax_fit) down_sample() (in module BGlib.gmode.proc.fft)

E

exp() (in module BGlib.be.analysis.be_relax_fit)

extract_loop_parameters() (BGlib.be.analysis.be_loop_fitter.BELoopFitter static method)

F

FakeBEPSGenerator (class in BGlib.be.translators.beps_data_generator) fft_to_real() (in module BGlib.gmode.proc.fft) fit_double_exp() (in module BGlib.be.analysis.be_relax_fit) fit_exp_curve() (in module BGlib.be.analysis.be_relax_fit) fit_loop() (in module BGlib.be.analysis.utils.be_loop) fit_sigmoid() (in module BGlib.be.analysis.be_relax_fit)

fit_str_exp() (in module BGlib.be.analysis.be_relax_fit) Fitter (class in BGlib.be.analysis), [1] (class in BGlib.be.analysis.fitter) flat_parm_dict_to_nested() (in module BGlib.be.translators.df_utils.be_utils) ForcIVTranslator (class in BGlib.be.translators.forc_iv) FrequencyFilter (class in BGlib.gmode.proc.fft)

G

GDMTranslator (class in BGlib.gmode.translators.general_dynamic_mode) generate_bipolar_triangular_waveform() (in module BGlib.be.translators.df_utils.be_utils) generate_guess() (in module BGlib.be.analysis.utils.be_loop) generatePlotGroups() (in module BGlib.be.translators.df_utils.be_utils) generateTestSpectroscopicData() (in module BGlib.be.translators.df_utils.be_utils) get_2d_gauss_lpf() (in module BGlib.gmode.proc.fft) get_fft_stack() (in module BGlib.gmode.proc.fft) get_noise_floor() (in module BGlib.gmode.proc.fft) get_noise_vec() (in module BGlib.be.translators.df_utils.beps_gen_utils) get_num_pixels() (BGlib.be.translators.beps_ndf.BEPSndfParser method) get_rotation_matrix() (in module BGlib.be.analysis.utils.be_loop) get_spatial_pixels() (BGlib.be.translators.beps_ndf.BEPSndfParser method) get_switching_coefs() (in module BGlib.be.analysis.utils.be_loop) get_wave_type() (BGlib.be.translators.beps_ndf.BEPSndfParser method)

getActiveUDVSsteps() (in module BGlib.be.translators.df_utils.be_utils) getDataIndicesForUDVSstep() (in module BGlib.be.translators.df_utils.be_utils) getForExcitWfm() (in module BGlib.be.translators.df_utils.be_utils) getIndicesforPlotGroup() (in module BGlib.be.translators.df_utils.be_utils) getSliceForExcWfm() (in module BGlib.be.translators.df_utils.be_utils) getSpecSliceForUDVSstep() (in module BGlib.be.translators.df_utils.be_utils) getSpectralData() (in module BGlib.be.viz.qt_visualizers.io_funcs) getSpectroscopicParmLabel() (in module BGlib.be.translators.df_utils.be_utils) GIVBayesian (class in BGlib.gmode.analysis), [1] (class in BGlib.gmode.analysis.giv_bayesian) GIVTranslator (class in BGlib.gmode.translators.gmode_iv) GLineTranslator (class in BGlib.gmode.translators.gmode_line) GTuneTranslator (class in BGlib.gmode.translators.gmode_tune) guess_loops_hierarchically() (in module BGlib.be.analysis.be_loop_fitter)

H

HarmonicPassFilter (class in BGlib.gmode.proc.fft)

I

infer_bipolar_triangular_fraction_phase() (in module BGlib.be.translators.df_utils.be_utils) is_different_from() (BGlib.be.translators.beps_ndf.BEPSndfPixel method) is_valid_file() (BGlib.be.translators.be_odf.BEodfTranslator static method) (BGlib.be.translators.be_odf_relaxation.BEodfRelaxationTranslator static method) (BGlib.be.translators.beps_data_generator.FakeBEPSGenerator static method) (BGlib.be.translators.beps_ndf.BEPSndfTranslator method) (BGlib.be.translators.forc_iv.ForcIVTranslator static method) (BGlib.be.translators.labview_h5_patcher.LabViewH5Patcher static method) (BGlib.gmode.translators.general_dynamic_mode.GDMTranslator static method) (BGlib.gmode.translators.gmode_iv.GIVTranslator static method) (BGlib.gmode.translators.gmode_line.GLineTranslator static method) (BGlib.gmode.translators.gmode_tune.GTuneTranslator static method) (BGlib.misc.translators.tr_kpfm.TRKPFMTranslator static method)

isSimpleDataset() (in module BGlib.be.translators.df_utils.be_utils)

J

jupyter_visualize_be_spectrograms() (in module BGlib.be.viz.be_viz_utils) jupyter_visualize_beps_loops() (in module BGlib.be.viz.be_viz_utils)

jupyter_visualize_beps_sho() (in module BGlib.be.viz.be_viz_utils) jupyter_visualize_loop_sho_raw_comparison() (in module BGlib.be.viz.be_viz_utils) jupyter_visualize_parameter_maps() (in module BGlib.be.viz.be_viz_utils)

L

labels (BGlib.be.analysis.utils.tree.ClusterTree attribute) LabViewH5Patcher (class in BGlib.be.translators.labview_h5_patcher) loadDataFunc() (in module BGlib.be.viz.qt_visualizers.io_funcs)

loop_fit_function() (in module BGlib.be.analysis.utils.be_loop) loop_fit_jacobian() (in module BGlib.be.analysis.utils.be_loop) LowPassFilter (class in BGlib.gmode.proc.fft)

M

maxReadPixels() (in module BGlib.be.translators.df_utils.be_utils) module BGlib BGlib.be BGlib.be.analysis, [1] BGlib.be.analysis.be_loop_fitter BGlib.be.analysis.be_relax_fit BGlib.be.analysis.be_sho_fitter BGlib.be.analysis.fitter BGlib.be.analysis.utils, [1], [2] BGlib.be.analysis.utils.be_loop BGlib.be.analysis.utils.be_sho BGlib.be.analysis.utils.tree BGlib.be.translators, [1] BGlib.be.translators.be_odf BGlib.be.translators.be_odf_relaxation BGlib.be.translators.beps_data_generator BGlib.be.translators.beps_ndf BGlib.be.translators.df_utils BGlib.be.translators.df_utils.be_utils BGlib.be.translators.df_utils.beps_gen_utils BGlib.be.translators.df_utils.histogram BGlib.be.translators.forc_iv BGlib.be.translators.labview_h5_patcher BGlib.be.viz, [1] BGlib.be.viz.be_viz_utils, [1], [2] BGlib.be.viz.qt_visualizers BGlib.be.viz.qt_visualizers.io_funcs BGlib.gmode BGlib.gmode.analysis, [1] BGlib.gmode.analysis.giv_bayesian BGlib.gmode.analysis.utils BGlib.gmode.analysis.utils.giv_utils BGlib.gmode.proc BGlib.gmode.proc.fft BGlib.gmode.proc.gmode_utils BGlib.gmode.proc.hist BGlib.gmode.proc.signal_filter BGlib.gmode.translators, [1] BGlib.gmode.translators.df_utils BGlib.gmode.translators.df_utils.gmode_utils BGlib.gmode.translators.general_dynamic_mode BGlib.gmode.translators.gmode_iv BGlib.gmode.translators.gmode_line BGlib.gmode.translators.gmode_tune BGlib.gmode.viz, [1] BGlib.misc BGlib.misc.translators, [1] BGlib.misc.translators.tr_kpfm

N

Node (class in BGlib.be.analysis.utils.tree)

NoiseBandFilter (class in BGlib.gmode.proc.fft) normalizeBEresponse() (in module BGlib.be.translators.df_utils.be_utils)

P

parms_dict (BGlib.be.analysis.be_loop_fitter.BELoopFitter attribute) (BGlib.be.analysis.be_relax_fit.BERelaxFit attribute) (BGlib.be.analysis.be_sho_fitter.BESHOfitter attribute) (BGlib.be.analysis.fitter.Fitter attribute) (BGlib.gmode.analysis.giv_bayesian.GIVBayesian attribute) (BGlib.gmode.proc.signal_filter.SignalFilter attribute) parmsToDict() (in module BGlib.be.translators.df_utils.be_utils)

plot_1d_spectrum() (in module BGlib.be.viz.be_viz_utils) plot_2d_spectrogram() (in module BGlib.be.viz.be_viz_utils) plot_bayesian_results() (in module BGlib.gmode.analysis.utils.giv_utils) plot_bayesian_spot_from_h5() (in module BGlib.gmode.analysis.utils.giv_utils) plot_histograms() (in module BGlib.be.viz.be_viz_utils) plot_loop_guess_fit() (in module BGlib.be.viz.be_viz_utils) plot_loop_sho_raw_comparison() (in module BGlib.be.viz.be_viz_utils) projectLoop() (in module BGlib.be.analysis.utils.be_loop)

R

read_all_data() (BGlib.be.translators.be_odf.BEodfParser method) read_pixel() (BGlib.be.translators.be_odf.BEodfParser method) (BGlib.be.translators.beps_ndf.BEPSndfParser method) readACData() (in module BGlib.be.viz.qt_visualizers.io_funcs) readData() (in module BGlib.be.viz.qt_visualizers.io_funcs) readDCData() (in module BGlib.be.viz.qt_visualizers.io_funcs)

readGmodeParms() (in module BGlib.gmode.translators.df_utils.gmode_utils) remove_non_exist_spec_dim_labs() (in module BGlib.be.translators.df_utils.be_utils) requires_conjugate() (in module BGlib.be.translators.df_utils.be_utils) reset() (BGlib.be.translators.be_odf.BEodfParser method) reshape_from_lines_to_pixels() (in module BGlib.gmode.proc.gmode_utils) reshape_mean_data() (in module BGlib.be.translators.df_utils.be_utils)

S

seek_to_pixel() (BGlib.be.translators.be_odf.BEodfParser method) set_up_fit() (BGlib.be.analysis.be_loop_fitter.BELoopFitter method) (BGlib.be.analysis.be_sho_fitter.BESHOfitter method) (BGlib.be.analysis.fitter.Fitter method) set_up_guess() (BGlib.be.analysis.be_loop_fitter.BELoopFitter method) (BGlib.be.analysis.be_sho_fitter.BESHOfitter method) (BGlib.be.analysis.fitter.Fitter method) shift_vdc() (in module BGlib.be.analysis.be_loop_fitter) SHOestimateGuess() (in module BGlib.be.analysis.utils.be_sho) SHOfastGuess() (in module BGlib.be.analysis.utils.be_sho)

SHOfit() (in module BGlib.be.analysis.utils.be_sho) SHOFitFunc (class in BGlib.be.analysis.be_sho_fitter) SHOfunc() (in module BGlib.be.analysis.utils.be_sho) (in module BGlib.be.viz.be_viz_utils) SHOGuessFunc (class in BGlib.be.analysis.be_sho_fitter) SHOlowerBound() (in module BGlib.be.analysis.utils.be_sho) SHOupperBound() (in module BGlib.be.analysis.utils.be_sho) show() (in module BGlib.be.viz.be_viz_utils) sigmoid() (in module BGlib.be.analysis.be_relax_fit) SignalFilter (class in BGlib.gmode.proc.signal_filter) str_exp() (in module BGlib.be.analysis.be_relax_fit)

T

test() (BGlib.be.analysis.be_loop_fitter.BELoopFitter method) (BGlib.be.analysis.be_relax_fit.BERelaxFit method) (BGlib.be.analysis.be_sho_fitter.BESHOfitter method) (BGlib.be.analysis.fitter.Fitter method) (BGlib.gmode.analysis.giv_bayesian.GIVBayesian method) (BGlib.gmode.proc.signal_filter.SignalFilter method) test_filter() (in module BGlib.gmode.proc.gmode_utils) translate() (BGlib.be.translators.be_odf.BEodfTranslator method) (BGlib.be.translators.be_odf_relaxation.BEodfRelaxationTranslator method) (BGlib.be.translators.beps_data_generator.FakeBEPSGenerator method) (BGlib.be.translators.beps_ndf.BEPSndfTranslator method) (BGlib.be.translators.forc_iv.ForcIVTranslator method) (BGlib.be.translators.labview_h5_patcher.LabViewH5Patcher method) (BGlib.gmode.translators.general_dynamic_mode.GDMTranslator method) (BGlib.gmode.translators.gmode_iv.GIVTranslator method) (BGlib.gmode.translators.gmode_line.GLineTranslator method) (BGlib.gmode.translators.gmode_tune.GTuneTranslator method) (BGlib.misc.translators.tr_kpfm.TRKPFMTranslator method)

trimUDVS() (in module BGlib.be.translators.df_utils.be_utils) TRKPFMTranslator (class in BGlib.misc.translators.tr_kpfm)

U

use_partial_computation() (BGlib.be.analysis.be_loop_fitter.BELoopFitter method) (BGlib.be.analysis.be_relax_fit.BERelaxFit method) (BGlib.be.analysis.be_sho_fitter.BESHOfitter method) (BGlib.be.analysis.fitter.Fitter method) (BGlib.gmode.analysis.giv_bayesian.GIVBayesian method) (BGlib.gmode.proc.signal_filter.SignalFilter method)

V

visualize_plot_groups() (in module BGlib.be.translators.df_utils.be_utils)

visualize_sho_results() (in module BGlib.be.viz.be_viz_utils) viz_berelaxfit() (in module BGlib.be.viz.be_viz_utils)

W

wavelet_peaks() (in module BGlib.be.analysis.be_sho_fitter)

write_condensed (BGlib.gmode.proc.signal_filter.SignalFilter attribute)