Reading a DM3 File with ScopeReader¶
Gerd Duscher
10/09/2020
This document is a simple example of how to read DM3 Files into the sidpy dataformat
UNDER CONSTRUCTION
Introduction¶
Digital Micrograph from Gatan runs on many TEMs for data acquisition. We read and plot such files here.
Import all necessary packages¶
There are a few setup procedures that need to be followed before any code is written. In this step, we simply load a few python packages that will be necessary in the later steps.
[1]:
%pylab notebook
%gui qt
import sys
from sidpy.io.interface_utils import openfile_dialog
sys.path.insert(0,'../../')
from SciFiReaders import DM3Reader
import SciFiReaders
print('SciFiReaders version: ', SciFiReaders.__version__)
import sidpy
print('sidpy version: ', sidpy.__version__)
Populating the interactive namespace from numpy and matplotlib
WARNING:hyperspy_gui_traitsui:The nbAgg matplotlib backend is not compatible with the traitsui GUI elements. For more information, read http://hyperspy.readthedocs.io/en/stable/user_guide/getting_started.html#possible-warnings-when-importing-hyperspy.
WARNING:hyperspy_gui_traitsui:The traitsui GUI elements are not available.
SciFiReaders version: 0.0.1
sidpy version: 0.0.5
Open a file dialog¶
Here we select the name of the file to open. We will be using the sidpy interface to do that.
The openfile_dialog will open QT file dialog to select a file.
For examples go to the example_data directory in the original folder of this notebook.
Note.: in some operating systems the window will not show up on top, look in your task bar.
[2]:
file_name = openfile_dialog()
print(file_name)
Catch a bad selection or cancelling of file selection¶
[4]:
if len(file_name) < 3 or file_name[-4:] != '.dm3':
print('File not supported')
Read file¶
We use the ScopeReader to read the file into a sidpy dataset. All metadata (absolutely everything) is saved in the original_metadata attribute of the sidpy Dataset. If the selected file is not a dm3 File you get an IOError.
[5]:
dm3_reader = DM3Reader(file_name)
dataset = dm3_reader.read()
print(dataset)
dataset
sidpy.Dataset of type IMAGE with:
dask.array<Analog 06, shape=(1600, 1024), dtype=float32, chunksize=(1600, 1024), chunktype=numpy.ndarray>
data contains: intensity (counts)
and Dimensions:
x: distance (counts) of size (1600,)
y: distance (counts) of size (1024,)
with metadata: ['image_type']
[5]:
|
Plot File¶
Only one command is necessary to plot the file.
[6]:
dataset.plot()
DM3 Original Metadata¶
Digital micrograph stores a lot of metadata in the file and we read all of them and store that information in the original_metadata.
[7]:
dataset.view_original_metadata()
0777\x00NNN\x00CCC\x00;;;\x00888\x00>>>\x00BBB\x00@@@\x00@@@\x00<<<\x00555\x00>>>\x00KKK\x00BBB\x00PPP\x00;;;\x00@@@\x00:::\x00000\x00;;;\x00III\x00LLL\x00>>>\x00===\x00;;;\x00===\x00@@@\x00EEE\x00???\x00===\x00AAA\x00HHH\x00LLL\x00HHH\x00;;;\x00===\x00<<<\x00111\x00<<<\x00HHH\x00EEE\x00FFF\x00QQQ\x00GGG\x00>>>\x00)))\x00777\x00666\x00333\x00;;;\x00DDD\x00RRR\x00===\x00EEE\x00999\x00CCC\x00222\x00///\x00@@@\x00OOO\x00LLL\x00OOO\x00III\x00777\x00888\x00777\x00777\x00999\x00AAA\x00EEE\x00NNN\x00CCC\x00LLL\x00:::\x00;;;\x00:::\x00777\x00AAA\x00AAA\x00:::\x00DDD\x00III\x00KKK\x00===\x00>>>\x00???\x00777\x00AAA\x00HHH\x00DDD\x00MMM\x00@@@\x00===\x00EEE\x00888\x00111\x00DDD\x00CCC\x00>>>\x00AAA\x00AAA\x00CCC\x00AAA\x00EEE\x00DDD\x00???\x00666\x00CCC\x00LLL\x00LLL\x00KKK\x00FFF\x00>>>\x00===\x00KKK\x00DDD\x00PPP\x00777\x00>>>\x00HHH\x00BBB\x00HHH\x00EEE\x00222\x00222\x00>>>\x00III\x00GGG\x00<<<\x00III\x00@@@\x00;;;\x00///\x00FFF\x00===\x00===\x00:::\x00@@@\x00777\x00???\x00FFF\x00BBB\x00<<<\x00>>>\x00KKK\x00MMM\x00III\x00AAA\x00@@@\x00DDD\x00@@@\x00GGG\x00AAA\x00;;;\x00:::\x00???\x00>>>\x00>>>\x00GGG\x00III\x00>>>\x00;;;\x00GGG\x00<<<\x00AAA\x00999\x00BBB\x00<<<\x00HHH\x00KKK\x00EEE\x00>>>\x00999\x00>>>\x00BBB\x00EEE\x00BBB\x00FFF\x00GGG\x00@@@\x00EEE\x00666\x00<<<\x00>>>\x00???\x00CCC\x00===\x00BBB\x00@@@\x00III\x00AAA\x00>>>\x00;;;\x00;;;\x00BBB\x00FFF\x00BBB\x00@@@\x00CCC\x00>>>\x00888\x00BBB\x00BBB\x00FFF\x00FFF\x00KKK\x00>>>\x00;;;\x00@@@\x00CCC\x00BBB\x00888\x00@@@\x00>>>\x00>>>\x00UUU\x00DDD\x00888\x00888\x00;;;\x00AAA\x00III\x00LLL\x00;;;\x00@@@\x00;;;\x00GGG\x00III\x00LLL\x00>>>\x00<<<\x00999\x00AAA\x00FFF\x00BBB\x00000\x00<<<\x00>>>\x00AAA\x00AAA\x00XXX\x00FFF\x00===\x00<<<\x00???\x00CCC\x00NNN\x00@@@\x00:::\x00DDD\x00@@@\x00BBB\x00BBB\x00???\x00666\x00@@@\x00DDD\x00DDD\x00<<<\x00DDD\x00<<<\x00@@@\x00;;;\x00FFF\x00@@@\x00>>>\x00FFF\x00JJJ\x00KKK\x00GGG\x00???\x00:::\x00:::\x00AAA\x00===\x00???\x00EEE\x00===\x00999\x00333\x00;;;\x00EEE\x00HHH\x00EEE\x00HHH\x00999\x00444\x00***\x00888\x00:::\x00:::\x00444\x00KKK\x00TTT\x00;;;\x00;;;\x00MMM\x00;;;\x00888\x00///\x00@@@\x00MMM\x00KKK\x00LLL\x00OOO\x00333\x00NNN\x00CCC\x00333\x00<<<\x00;;;\x00III\x00222\x00>>>\x00JJJ\x00===\x00999\x00111\x00888\x00@@@\x00<<<\x00HHH\x00KKK\x00GGG\x00EEE\x00???\x00BBB\x00===\x00GGG\x00HHH\x00>>>\x00NNN\x00DDD\x00PPP\x00???\x00222\x00???\x00555\x00CCC\x00000\x00RRR\x00KKK\x00)))\x00FFF\x00555\x00KKK\x00>>>\x00555\x00777\x00777\x00CCC\x00MMM\x00RRR\x00@@@\x00EEE\x00999\x00GGG\x00:::\x00HHH\x00>>>\x00444\x00555\x00AAA\x00???\x00HHH\x00444\x00666\x00888\x00@@@\x00;;;\x00MMM\x00DDD\x00222\x00888\x00BBB\x00BBB\x00EEE\x00GGG\x00EEE\x00>>>\x00111\x00PPP\x00DDD\x00SSS\x00@@@\x00<<<\x00444\x00888\x00666\x00CCC\x00...\x00666\x00GGG\x00BBB\x00@@@\x00@@@\x00999\x00333\x00555\x00@@@\x00EEE\x00HHH\x00QQQ\x00DDD\x00AAA\x00;;;\x00777\x00CCC\x00FFF\x00666\x00NNN\x00HHH\x00HHH\x00CCC\x00333\x00333\x00000\x00555\x00BBB\x00GGG\x00PPP\x00CCC\x00QQQ\x00777\x00777\x00;;;\x00666\x00999\x00BBB\x00\\\\\\\x00DDD\x00AAA\x00DDD\x00444\x00CCC\x00444\x00CCC\x00AAA\x00888\x00BBB\x00UUU\x00III\x00HHH\x00@@@\x00;;;\x00666\x00AAA\x00QQQ\x00<<<\x00III\x00HHH\x00HHH\x00;;;\x00FFF\x00;;;\x00FFF\x00III\x00HHH\x00OOO\x00???\x00AAA\x00EEE\x00666\x00444\x00EEE\x00BBB\x00999\x00999\x00BBB\x00GGG\x00FFF\x00GGG\x00BBB\x00???\x00777\x00===\x00;;;\x00===\x00555\x00666\x00HHH\x00@@@\x00999\x00:::\x00CCC\x00<<<\x00///\x00===\x00GGG\x00888\x00BBB\x00HHH\x00FFF\x00555\x00111\x00@@@\x00>>>\x00777\x00BBB\x00HHH\x00>>>\x00<<<\x00MMM\x00<<<\x00,,,\x00333\x00EEE\x00FFF\x00>>>\x00AAA\x00III\x00;;;\x00:::\x00999\x00GGG\x00;;;\x00888\x00HHH\x00QQQ\x00GGG\x00HHH\x00EEE\x00444\x00666\x00;;;\x00PPP\x00HHH\x00>>>\x00NNN\x00RRR\x00>>>\x00999\x00@@@\x00===\x00888\x00>>>\x00JJJ\x00EEE\x00===\x00???\x00bbb\x00<<<\x00666\x00;;;\x00<<<\x00@@@\x00???\x00XXX\x00III\x00AAA\x00;;;\x00<<<\x00GGG\x00:::\x00KKK\x00???\x00444\x00CCC\x00BBB\x00MMM\x00:::\x00CCC\x00JJJ\x00<<<\x00555\x00FFF\x00GGG\x00<<<\x00===\x00>>>\x00???\x00666\x00III\x00III\x00:::\x00444\x00HHH\x00KKK\x00BBB\x00===\x00BBB\x00???\x00FFF\x00HHH\x00KKK\x00777\x00:::\x00;;;\x00FFF\x00@@@\x00LLL\x00EEE\x00<<<\x00666\x00:::\x00CCC\x00CCC\x00===\x00FFF\x00===\x00888\x00???\x00FFF\x00;;;\x00111\x00888\x00III\x00OOO\x00III\x00QQQ\x00CCC\x00777\x00***\x00888\x00OOO\x00777\x00EEE\x00III\x00HHH\x00===\x00AAA\x00III\x00111\x00===\x00JJJ\x00KKK\x00EEE\x00@@@\x00<<<\x00999\x00222\x00===\x00III\x00GGG\x00===\x00III\x00FFF\x00HHH\x00NNN\x00>>>\x00<<<\x00:::\x00333\x00QQQ\x00BBB\x00555\x00GGG\x00FFF\x00<<<\x00:::\x00NNN\x00:::\x00777\x00777\x00===\x00666\x00GGG\x00DDD\x00BBB\x00???\x00***\x00EEE\x00@@@\x00;;;\x00EEE\x00===\x00555\x00>>>\x00AAA\x00III\x00;;;\x00999\x00CCC\x00AAA\x00777\x00BBB\x00EEE\x00HHH\x00<<<\x00FFF\x00===\x00>>>\x00222\x00;;;\x00LLL\x00???\x00???\x00DDD\x00@@@\x00;;;\x00888\x00MMM\x00EEE\x00BBB\x00888\x00GGG\x00888\x00999\x00III\x00HHH\x00444\x00333\x00NNN\x00DDD\x00<<<\x00FFF\x00<<<\x00AAA\x00444\x00NNN\x00FFF\x00666\x00333\x00FFF\x00AAA\x00@@@\x00GGG\x00LLL\x00666\x00333\x00999\x00KKK\x00888\x00;;;\x00>>>\x00EEE\x00;;;\x00FFF\x00FFF\x00777\x00+++\x00===\x00VVV\x00JJJ\x00DDD\x00JJJ\x00AAA\x00777\x00:::\x00GGG\x00BBB\x00444\x00===\x00EEE\x00QQQ\x00BBB\x00FFF\x00>>>\x00333\x00888\x00LLL\x00DDD\x00HHH\x00MMM\x00GGG\x00888\x00III\x00DDD\x00===\x00555\x00888\x00EEE\x00EEE\x00JJJ\x00EEE\x00@@@\x00999\x00444\x00EEE\x00GGG\x00HHH\x00JJJ\x00III\x00HHH\x00777\x00@@@\x00;;;\x00888\x00???\x00GGG\x00LLL\x00KKK\x00<<<\x00III\x00;;;\x00000\x00000\x00HHH\x00HHH\x00@@@\x00JJJ\x00TTT\x00777\x00777\x00III\x00>>>\x00<<<\x00EEE\x00HHH\x00:::\x00BBB\x00III\x00EEE\x00:::\x00???\x00;;;\x00JJJ\x00<<<\x00@@@\x00TTT\x00AAA\x00<<<\x00AAA\x00:::\x00;;;\x00DDD\x00DDD\x00@@@\x00999\x00HHH\x00EEE\x00@@@\x00:::\x00DDD\x00GGG\x00EEE\x00:::\x00OOO\x00RRR\x00777\x00;;;\x00FFF\x00;;;\x00>>>\x00CCC\x00<<<\x00;;;\x00===\x00OOO\x00SSS\x00:::\x00@@@\x00:::\x00FFF\x00:::\x00:::\x00<<<\x00NNN\x00444\x00DDD\x00>>>\x00BBB\x00<<<\x00:::\x00555\x00HHH\x00555\x00RRR\x00KKK\x00DDD\x00AAA\x00<<<\x00666\x00000\x00OOO\x00EEE\x00:::\x00===\x00BBB\x00III\x00999\x00GGG\x00777\x00@@@\x00...\x00AAA\x00PPP\x00FFF\x00NNN\x00KKK\x00444\x00222\x00???\x00>>>\x00)))\x00222\x00FFF\x00RRR\x00EEE\x00QQQ\x00:::\x00777\x00"""\x00<<<\x00NNN\x00CCC\x00:::\x00RRR\x00NNN\x00DDD\x00<<<\x00@@@\x00===\x00,,,\x00888\x00JJJ\x00BBB\x00???\x00DDD\x00\\\\\\\x00222\x00999\x00HHH\x00RRR\x00EEE\x00>>>\x00???\x00PPP\x00===\x00KKK\x00BBB\x00AAA\x00===\x00888\x00VVV\x00EEE\x00555\x00MMM\x00BBB\x00111\x00HHH\x00;;;\x00???\x00>>>\x00<<<\x00HHH\x00CCC\x00FFF\x00III\x00,,,\x00777\x00888\x00GGG\x00???\x00999\x00;;;\x00ZZZ\x00GGG\x00888\x00777\x00III\x00666\x00777\x00[[[\x00JJJ\x00:::\x00DDD\x00555\x00666\x00///\x00777\x00BBB\x00777\x00444\x00III\x00BBB\x00===\x00777\x00OOO\x00III\x00@@@\x00===\x00NNN\x00===\x00111\x00BBB\x00NNN\x00KKK\x00===\x00NNN\x00,,,\x00===\x00<<<\x00DDD\x00:::\x00777\x00EEE\x00888\x00KKK\x00BBB\x00QQQ\x00444\x00444\x00<<<\x00CCC\x00JJJ\x00RRR\x00FFF\x00AAA\x00>>>\x00DDD\x00AAA\x00>>>\x00777\x00000\x00KKK\x00LLL\x00MMM\x00FFF\x00CCC\x00///\x00...\x00MMM\x00KKK\x00FFF\x00@@@\x00EEE\x00;;;\x00>>>\x00999\x00===\x00,,,\x00???\x00>>>\x00LLL\x00JJJ\x00444\x00JJJ\x00777\x00===\x00;;;\x00RRR\x00===\x00:::\x00:::\x00<<<\x00888\x00GGG\x00RRR\x00GGG\x00???\x00;;;\x00HHH\x00PPP\x00GGG\x00EEE\x00???\x00:::\x00:::\x00@@@\x00AAA\x00===\x00;;;\x00VVV\x00EEE\x00555\x00NNN\x00MMM\x00777\x00???\x00MMM\x00888\x00333\x00HHH\x00EEE\x00999\x00>>>\x00HHH\x00DDD\x00---\x00FFF\x00BBB\x00III\x00888\x00;;;\x00JJJ\x00:::\x00AAA\x00@@@\x00:::\x00AAA\x00:::\x00NNN\x00TTT\x00DDD\x00EEE\x00JJJ\x00666\x00444\x00MMM\x00FFF\x00:::\x00>>>\x00CCC\x00GGG\x00<<<\x00III\x00PPP\x00???\x00333\x00999\x00III\x00EEE\x00III\x00DDD\x00CCC\x00;;;\x00;;;\x00HHH\x00CCC\x00999\x00<<<\x00???\x00LLL\x00@@@\x00DDD\x00PPP\x00111\x00555\x00===\x00EEE\x00???\x00:::\x00III\x00EEE\x00666\x00FFF\x00@@@\x00111\x00000\x00@@@\x00eee\x00???\x00NNN\x00JJJ\x00===\x00,,,\x00===\x00999\x00FFF\x00<<<\x00<<<\x00MMM\x00NNN\x00===\x00HHH\x00<<<\x00444\x00<<<\x00===\x00PPP\x00CCC\x00EEE\x00>>>\x00111\x00555\x00AAA\x00EEE\x00:::\x00666\x00>>>\x00]]]\x00BBB\x00BBB\x00>>>\x00,,,\x00111\x00FFF\x00VVV\x00AAA\x00DDD\x00BBB\x00???\x00111\x00:::\x00KKK\x00<<<\x00999\x00AAA\x00NNN\x00<<<\x00HHH\x00CCC\x00???\x00111\x00///\x00@@@\x00PPP\x00>>>\x00CCC\x00>>>\x00666\x00:::\x00JJJ\x00DDD\x00:::\x00;;;\x00MMM\x00EEE\x00@@@\x00BBB\x00@@@\x00999\x00&&&\x00CCC\x00MMM\x00:::\x00CCC\x00PPP\x00GGG\x00888\x00EEE\x00FFF\x00BBB\x00...\x00FFF\x00GGG\x00DDD\x00===\x00GGG\x00CCC\x00+++\x00555\x00DDD\x00>>>\x00333\x00@@@\x00KKK\x00GGG\x00???\x00BBB\x00DDD\x00999\x00888\x00555\x00FFF\x00;;;\x00AAA\x00NNN\x00GGG\x00<<<\x00;;;\x00GGG\x00???\x00FFF\x00>>>\x00QQQ\x00===\x00YYY\x00JJJ\x00444\x00DDD\x00DDD\x00>>>\x00...\x00...\x00???\x00QQQ\x00EEE\x00HHH\x00JJJ\x00222\x00444\x00;;;\x00BBB\x00@@@\x00BBB\x00HHH\x00CCC\x00===\x00III\x00AAA\x00...\x00000\x00>>>\x00[[[\x00KKK\x00HHH\x00>>>\x00;;;\x00111\x00111\x00BBB\x00===\x00<<<\x00:::\x00DDD\x00III\x00EEE\x00KKK\x00HHH\x00,,,\x00888\x00QQQ\x00GGG\x00;;;\x00III\x00AAA\x00===\x00CCC\x00>>>\x00GGG\x00---\x00777\x00BBB\x00UUU\x00BBB\x00EEE\x00JJJ\x00000\x00888\x00<<<\x00KKK\x00BBB\x00CCC\x00EEE\x00EEE\x00555\x00BBB\x00JJJ\x00:::\x00111\x00>>>\x00III\x00:::\x00DDD\x00888\x00;;;\x00999\x00333\x00III\x00888\x00666\x00???\x00GGG\x00III\x00???\x00FFF\x00EEE\x00888\x00444\x00HHH\x00CCC\x00@@@\x00BBB\x00KKK\x00999\x00===\x00DDD\x00KKK\x00555\x00???\x00NNN\x00999\x00===\x00III\x00:::\x00???\x00:::\x00===\x00>>>\x00===\x00AAA\x00III\x00BBB\x00BBB\x00>>>\x00KKK\x00???\x00111\x00GGG\x00???\x00:::\x00<<<\x00@@@\x00JJJ\x00>>>\x00AAA\x00@@@\x00999\x00999\x00<<<\x00GGG\x00DDD\x00???\x00DDD\x00III\x00:::\x00<<<\x00KKK\x00<<<\x00222\x00...\x00FFF\x00FFF\x00>>>\x00HHH\x00CCC\x00444\x00???\x00GGG\x00HHH\x00@@@\x00<<<\x00FFF\x00;;;\x00???\x00NNN\x00CCC\x00AAA\x00777\x00OOO\x00DDD\x00777\x00GGG\x00DDD\x00BBB\x00999\x00NNN\x00AAA\x00999\x00222\x00CCC\x00III\x00???\x00???\x00QQQ\x00QQQ\x00BBB\x00,,,\x00BBB\x00KKK\x00444\x00888\x00@@@\x00DDD\x00;;;\x00;;;\x00EEE\x00;;;\x00OOO\x00@@@\x00BBB\x00555\x00UUU\x00===\x00>>>\x00222\x00@@@\x00HHH\x00@@@\x00???\x00@@@\x00///\x00>>>\x00???\x00444\x00888\x00OOO\x00CCC\x00KKK\x00FFF\x00QQQ\x00HHH\x00333\x00444\x00CCC\x00NNN\x00888\x00<<<\x00TTT\x00@@@\x00777\x00FFF\x00KKK\x00CCC\x00;;;\x00CCC\x00III\x00JJJ\x00222\x00===\x00===\x00AAA\x00<<<\x00OOO\x00>>>\x00EEE\x00>>>\x00DDD\x00EEE\x00,,,\x00III\x00SSS\x00===\x00CCC\x00KKK\x00ZZZ\x00666\x00DDD\x00///\x00CCC\x00EEE\x00===\x00KKK\x00999\x00@@@\x00GGG\x00???\x00666\x00@@@\x00@@@\x00FFF\x00GGG\x00<<<\x00VVV\x00>>>\x00---\x00;;;\x00PPP\x00AAA\x00BBB\x00KKK\x00;;;\x00:::\x00CCC\x00MMM\x00777\x00<<<\x00@@@\x00[[[\x00AAA\x00BBB\x00555\x00666\x00555\x00000\x00KKK\x00DDD\x00000\x00DDD\x00JJJ\x00888\x00555\x00???\x00@@@\x00111\x00444\x00???\x00XXX\x00DDD\x00>>>\x00DDD\x00(((\x00%%%\x00---\x00JJJ\x00---\x00===\x00PPP\x00DDD\x00888\x00???\x00[[[\x00555\x00555\x00LLL\x00JJJ\x00JJJ\x00CCC\x00MMM\x00111\x00000\x00CCC\x00III\x00+++\x00>>>\x00OOO\x00???\x00>>>\x00>>>\x00AAA\x00@@@\x00///\x00---\x00HHH\x00GGG\x00===\x00JJJ\x00@@@\x00,,,\x00777\x00QQQ\x00@@@\x00---\x00>>>\x00WWW\x00MMM\x00JJJ\x00lll\x00;;;\x00999\x00888\x00DDD\x00RRR\x00===\x00GGG\x00FFF\x00OOO\x00555\x00000\x00EEE\x00777\x00111\x00---\x00CCC\x00KKK\x00DDD\x00III\x00III\x00:::\x00+++\x00===\x00BBB\x00???\x00>>>\x00BBB\x00KKK\x00333\x00GGG\x00>>>\x00222\x00333\x00@@@\x00777\x00666\x00@@@\x00SSS\x00===\x00GGG\x00LLL\x00;;;\x00;;;\x00===\x00DDD\x00DDD\x00KKK\x00LLL\x00KKK\x00...\x00EEE\x00BBB\x00AAA\x00<<<\x00777\x00BBB\x00HHH\x00@@@\x00III\x00===\x00---\x00AAA\x00>>>\x00<<<\x00===\x00666\x00III\x00AAA\x00333\x00>>>\x00DDD\x00...\x00:::\x00:::\x00LLL\x00GGG\x00EEE\x00???\x00999\x00222\x00888\x00===\x00CCC\x00000\x00CCC\x00DDD\x00BBB\x00AAA\x00MMM\x00JJJ\x00666\x00222\x00PPP\x00FFF\x00BBB\x00UUU\x00EEE\x00666\x00777\x00HHH\x00HHH\x00222\x00===\x00<<<\x00JJJ\x00BBB\x00HHH\x00JJJ\x00777\x00222\x00EEE\x00RRR\x00;;;\x00AAA\x00DDD\x00CCC\x00555\x00@@@\x00BBB\x00444\x00888\x00888\x00QQQ\x00KKK\x00CCC\x00JJJ\x00777\x00---\x00111\x00CCC\x00FFF\x00AAA\x00<<<\x00CCC\x00;;;\x00===\x00LLL\x00KKK\x00888\x00===\x00JJJ\x00GGG\x00EEE\x00;;;\x00888\x00333\x00)))\x00DDD\x00JJJ\x00<<<\x00FFF\x00HHH\x00444\x00888\x00EEE\x00EEE\x00777\x00:::\x00333\x00NNN\x00777\x00EEE\x00???\x00888\x00222\x00999\x00KKK\x00:::\x00III\x00???\x00CCC\x00AAA\x00GGG\x00YYY\x00>>>\x00>>>\x00;;;\x00FFF\x00555\x00000\x00:::\x00CCC\x00AAA\x00@@@\x00EEE\x00JJJ\x00<<<\x00???\x00SSS\x00;;;\x00222\x00DDD\x00JJJ\x00;;;\x00<<<\x00@@@\x00<<<\x00111\x00FFF\x00EEE\x00AAA\x00AAA\x00KKK\x00999\x00999\x00@@@\x00>>>\x00JJJ\x00CCC\x00;;;\x00GGG\x00HHH\x00>>>\x00777\x00KKK\x00>>>\x00999\x00>>>\x00OOO\x00<<<\x00888\x00444\x00999\x00---\x00===\x00JJJ\x00@@@\x00666\x00===\x00???\x00MMM\x00AAA\x00KKK\x00<<<\x00777\x00555\x00BBB\x00GGG\x00CCC\x00EEE\x00AAA\x00777\x00;;;\x00DDD\x00@@@\x00888\x00===\x00???\x00DDD\x00HHH\x00KKK\x00<<<\x00444\x00444\x00222\x00KKK\x00666\x00???\x00@@@\x00@@@\x00???\x00<<<\x00@@@\x00888\x00;;;\x00DDD\x00RRR\x00<<<\x00III\x00FFF\x00555\x00777\x00666\x00NNN\x00EEE\x00DDD\x00BBB\x00NNN\x00EEE\x00CCC\x00EEE\x00222\x00666\x00:::\x00EEE\x00FFF\x00???\x00777\x00@@@\x00>>>\x00>>>\x00CCC\x00RRR\x00888\x00BBB\x00;;;\x00HHH\x00222\x00EEE\x00<<<\x00>>>\x00555\x00???\x00HHH\x00@@@\x00WWW\x00AAA\x00FFF\x00:::\x00>>>\x00HHH\x00;;;\x00;;;\x00HHH\x00QQQ\x00111\x00222\x00BBB\x00@@@\x00BBB\x00999\x00SSS\x00666\x00;;;\x00HHH\x00@@@\x00PPP\x00;;;\x00DDD\x00@@@\x00<<<\x00<<<\x00<<<\x00:::\x00222\x00===\x00MMM\x00NNN\x00MMM\x00NNN\x00???\x00666\x00777\x00EEE\x00===\x00:::\x00:::\x00CCC\x00<<<\x00FFF\x00KKK\x00888\x00666\x00777\x00FFF\x00LLL\x00DDD\x00FFF\x00III\x00>>>\x00888\x00BBB\x00888\x00333\x00777\x00AAA\x00JJJ\x00GGG\x00VVV\x00EEE\x00000\x00333\x00AAA\x00NNN\x00<<<\x00<<<\x00CCC\x00;;;\x00:::\x00CCC\x00===\x00<<<\x00333\x00???\x00GGG\x00HHH\x00888\x00III\x00>>>\x00000\x00888\x00@@@\x00MMM\x00666\x00CCC\x00AAA\x00BBB\x00???\x00SSS\x00MMM\x00,,,\x00 \x00<<<\x00???\x00:::\x00AAA\x00HHH\x00555\x00333\x00999\x00YYY\x00555\x00999\x00\'\'\'\x00999\x00888\x00@@@\x00CCC\x00888\x00...\x00???\x00CCC\x00555\x00;;;\x00CCC\x00NNN\x00555\x00999\x00YYY\x00AAA\x00@@@\x00JJJ\x00999\x00FFF\x00MMM\x00WWW\x00888\x00<<<\x00CCC\x00GGG\x00???\x00...\x00LLL\x00555\x00DDD\x00999\x00VVV\x00???\x00;;;\x00EEE\x00999\x00888\x00333\x00===\x00OOO\x00BBB\x00===\x00III\x00NNN\x00BBB\x00>>>\x00222\x00MMM\x00BBB\x00bbb\x00NNN\x00,,,\x00888\x00GGG\x00555\x00,,,\x00BBB\x00XXX\x00999\x00DDD\x00KKK\x00GGG\x00///\x00>>>\x00EEE\x00EEE\x00GGG\x00RRR\x00===\x00<<<\x00...\x00===\x00GGG\x00888\x00===\x00III\x00VVV\x00EEE\x00===\x00bbb\x00III\x00<<<\x00222\x00GGG\x00;;;\x00KKK\x00@@@\x00GGG\x00III\x00MMM\x00:::\x00@@@\x00888\x00333\x00???\x00MMM\x00DDD\x00III\x00???\x00555\x00555\x00888\x00WWW\x00000\x00<<<\x00GGG\x00DDD\x00@@@\x00AAA\x00<<<\x00999\x00---\x00???\x00===\x00DDD\x00OOO\x00:::\x00FFF\x00---\x00FFF\x00CCC\x00HHH\x00GGG\x00GGG\x00LLL\x00444\x00TTT\x00???\x00333\x00555\x00555\x00>>>\x00???\x00666\x00AAA\x00FFF\x00,,,\x00AAA\x00QQQ\x00<<<\x00===\x00888\x00FFF\x00:::\x00999\x00BBB\x00111\x00///\x00;;;\x00BBB\x00===\x00JJJ\x00BBB\x00222\x00TTT\x00@@@\x00CCC\x00;;;\x00;;;\x00888\x00OOO\x00???\x00333\x00444\x00>>>\x00GGG\x00&&&\x00^^^\x00JJJ\x00CCC\x00BBB\x00<<<\x00@@@\x00888\x00EEE\x00>>>\x00GGG\x00555\x00222\x00333\x00QQQ\x00FFF\x00<<<\x00III\x00CCC\x00777\x00DDD\x00NNN\x00999\x00222\x00***\x00<<<\x00999\x00BBB\x00>>>\x00BBB\x00BBB\x00777\x00<<<\x00222\x00777\x00@@@\x00>>>\x00III\x00III\x00AAA\x00777\x00999\x00???\x00CCC\x00;;;\x00???\x00GGG\x00FFF\x00JJJ\x00BBB\x00>>>\x00===\x00555\x00<<<\x00OOO\x00JJJ\x00EEE\x00HHH\x00@@@\x00<<<\x00<<<\x00HHH\x00DDD\x00888\x00BBB\x00BBB\x00BBB\x00===\x00EEE\x00@@@\x00---\x00444\x00RRR\x00EEE\x00DDD\x00EEE\x00>>>\x00888\x00FFF\x00EEE\x00===\x00:::\x00222\x00CCC\x00JJJ\x00LLL\x00GGG\x00>>>\x00BBB\x00...\x00EEE\x00LLL\x00;;;\x00GGG\x00;;;\x00III\x00:::\x00EEE\x00FFF\x00BBB\x00;;;\x00@@@\x00FFF\x00@@@\x00===\x00AAA\x00999\x00222\x00AAA\x00SSS\x00???\x00777\x00===\x00BBB\x00;;;\x00>>>\x00III\x00GGG\x00999\x00FFF\x00LLL\x00<<<\x00???\x00555\x00>>>\x00DDD\x00DDD\x00HHH\x00EEE\x00AAA\x00AAA\x00>>>\x00???\x00<<<\x00EEE\x00NNN\x00AAA\x00EEE\x00NNN\x00HHH\x00444\x00333\x00JJJ\x00777\x00CCC\x00III\x00HHH\x00777\x00:::\x00999\x00<<<\x00333\x00>>>\x00CCC\x00JJJ\x00AAA\x00PPP\x00<<<\x00777\x00---\x00<<<\x00AAA\x00III\x00FFF\x00FFF\x00AAA\x00EEE\x00III\x00<<<\x00:::\x00000\x00444\x00DDD\x00OOO\x00GGG\x00HHH\x00<<<\x00777\x00999\x00>>>\x00CCC\x00666\x00@@@\x00PPP\x00CCC\x00GGG\x00HHH\x00;;;\x00,,,\x00DDD\x00MMM\x00QQQ\x00>>>\x00JJJ\x00KKK\x00222\x00:::\x00AAA\x00:::\x00555\x00'
DataType : 23
Dimensions :
0 : 192
1 : 123
PixelDepth : 4
ImageTags :
Name : Image Of Analog 06
UniqueID :
0 : 703470093
1 : 1166020138
2 : 1470332098
3 : 1364942491
1 :
ImageData :
Calibrations :
Brightness :
Origin : 0.0
Scale : 1.0
Units :
Dimension :
0 :
Origin : 0.0
Scale : 0.0625
Units :
1 :
Origin : 0.0
Scale : 0.0625
Units :
DisplayCalibratedUnits : True
Data : read
DataType : 2
Dimensions :
0 : 1600
1 : 1024
PixelDepth : 4
ImageTags :
DataBar :
Acquisition Date : 4/19/2021
Acquisition Time : 12:42:16 PM
Exposure Number : 68861
System Info : 1.326332413684375e+17
DigiScan :
Horizontal DS Offset : 0.0
Horizontal Image Center : 0.0
Horizontal Perpendicular Pixel Step : 0
Horizontal Pixel Step : -186
Horizontal Spacing : 189.728
Vertical DS Offset : 0.0
Vertical Image Center : 0.0
Vertical Perpendicular Pixel Step : -186
Vertical Pixel Step : 0
Vertical Spacing : 189.728
Zoom factor : 0.57900390625
Microscope Info :
Cs(mm) : 0.0
Emission Current (µA) : 0.0
Illumination Mode : STEM
Imaging Mode : IMAGING
Indicated Magnification : 256.0
Items :
0 :
Data Type : 20
Label : Specimen
Tag path : Microscope Info:Specimen
Value : LiMn2O4 NW
1 :
Data Type : 20
Label : Operator
Tag path : Microscope Info:Operator
Value :
2 :
Data Type : 20
Label : Microscope
Tag path : Microscope Info:Microscope
Value : UltraSTEM 100 kV
Microscope : UltraSTEM 100 kV
Name : None
Operation Mode : STEM
Operator :
Probe Current (nA) : 0.0
Probe Size (nm) : 0.0
Specimen : LiMn2O4 NW
STEM Camera Length : 1.0
Voltage : 60000.0
SI :
Acquisition :
Date : 4/19/2021
End time : 12:44:39 PM
Number of cycles : 1
Pixel time (s) : 0.01
Scan Options :
Scan sub-pixel : True
Spatial Sampling :
Height (pixels) : 64
Width (pixels) : 100
Start time : 12:42:16 PM
Survey Image :
Spectrum Image Rect : [95, 21, 637, 868]
UID :
0 : 230443211
1 : 536103321
2 : 453395375
3 : 1629969316
Scale : 16
Name : Analog 06
UniqueID :
0 : 343371447
1 : 1506936664
2 : 2127585798
3 : 1393435888
ImageSourceList :
0 :
ClassName : ImageSource:Simple
Id :
0 : 0
ImageRef : 1
InImageMode : True
MinVersionList :
0 :
RequiredVersion : 50659328
NextDocumentObjectID : 9
Page Behavior :
DoIntegralZoom : False
IsZoomedToWindow : False
LayedOut : False
PageTransform :
Offset : [0.0, 0.0]
Scale : [1.0, 1.0]
RestoreImageDisplayBounds : [0.0, 0.0, 1024.0, 1600.0]
RestoreImageDisplayID : 8
TargetDisplayID : 4294967295
PageSetup :
General : [1, 1000, 8500, 11000, 1000, 1000, -1000, -1000]
Win32 : b'\x04\x00\x00\x004!\x00\x00\xf8*\x00\x00\xfa\x00\x00\x00\xfa\x00\x00\x00\xfa\x00\x00\x00\xfa\x00\x00\x00\xe8\x03\x00\x00\xe8\x03\x00\x00\xe8\x03\x00\x00\xe8\x03\x00\x00\x00\x00\x00\x00\x01\x00\x01\x00\x01\x00\x01\x00\x01\x00O\x00'
SentinelList :
Thumbnails :
0 :
ImageIndex : 0
SourceSize_Pixels : [320, 205]
WindowPosition : [269, 751, 474, 1072]
[ ]: